This work was completed with the following R packages: grateful v. 0.2.4 (Francisco Rodriguez-Sanchez & Connor P. Jackson, 2023), knitr v. 1.48 (Xie, 2014, 2015, 2024), palmerpenguins v. 0.1.1 (Horst et al., 2020), pointblank v. 0.12.2 (Iannone et al., 2024), quarto v. 1.4.4 (Allaire & Dervieux, 2024), renv v. 1.0.7 (Ushey & Wickham, 2024), report v. 0.5.9 (Makowski et al., 2023), rmarkdown v. 2.28 (Allaire et al., 2024; Xie et al., 2018, 2020), sessioninfo v. 1.2.2 (Wickham et al., 2021), tidyverse v. 2.0.0 (Wickham et al., 2019), withr v. 3.0.1 (Hester et al., 2024).
About
Utilized Software
Quarto: 1.6.39
sessioninfo::session_info()─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.4.2 (2024-10-31)
os Ubuntu 22.04.5 LTS
system x86_64, linux-gnu
ui X11
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz UTC
date 2024-12-11
pandoc 3.4 @ /opt/quarto/bin/tools/ (via rmarkdown)
─ Packages ───────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
P cli 3.6.3 2024-06-21 [?] RSPM (R 4.4.0)
P digest 0.6.37 2024-08-19 [?] RSPM (R 4.4.0)
P evaluate 0.24.0 2024-06-10 [?] RSPM (R 4.4.0)
P fastmap 1.2.0 2024-05-15 [?] RSPM (R 4.4.0)
P grateful 0.2.4 2023-10-22 [?] RSPM (R 4.4.0)
P htmltools 0.5.8.1 2024-04-04 [?] RSPM (R 4.4.0)
P htmlwidgets 1.6.4 2023-12-06 [?] RSPM (R 4.4.0)
P jsonlite 1.8.8 2023-12-04 [?] RSPM (R 4.4.0)
P knitr 1.48 2024-07-07 [?] RSPM (R 4.4.0)
P later 1.3.2 2023-12-06 [?] RSPM (R 4.4.0)
P processx 3.8.4 2024-03-16 [?] RSPM (R 4.4.0)
P ps 1.7.7 2024-07-02 [?] RSPM (R 4.4.0)
P quarto 1.4.4 2024-07-20 [?] RSPM (R 4.4.0)
P Rcpp 1.0.13 2024-07-17 [?] RSPM (R 4.4.0)
renv 1.0.7 2024-04-11 [1] RSPM (R 4.4.2)
P rlang 1.1.4 2024-06-04 [?] RSPM (R 4.4.0)
P rmarkdown 2.28 2024-08-17 [?] RSPM (R 4.4.0)
P rstudioapi 0.16.0 2024-03-24 [?] RSPM (R 4.4.0)
P sessioninfo 1.2.2 2021-12-06 [?] RSPM (R 4.4.0)
P withr 3.0.1 2024-07-31 [?] RSPM (R 4.4.0)
P xfun 0.47 2024-08-17 [?] RSPM (R 4.4.0)
P yaml 2.3.10 2024-07-26 [?] RSPM (R 4.4.0)
[1] /home/runner/work/code-publishing/code-publishing/renv/library/linux-ubuntu-jammy/R-4.4/x86_64-pc-linux-gnu
[2] /home/runner/.cache/R/renv/sandbox/linux-ubuntu-jammy/R-4.4/x86_64-pc-linux-gnu/db5e602d
P ── Loaded and on-disk path mismatch.
──────────────────────────────────────────────────────────────────────────────License and Disclaimer
Except where noted otherwise, the material in this tutorial is licensed under CC BY 4.0. None of the discussion in this tutorial constitutes legal advice.
The screenshots of the RStudio IDE are available under the GNU Affero General Public License v3.
GNU Affero General Public License v3
Copyright (C) 2024 Posit Software, PBC
This program is free software: you can redistribute it and/or modify it under the terms of version 3 of the GNU Affero General Public License as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.Funding
This work was partly funded by the Berkeley Initiative for Transparency in the Social Sciences (BITSS), managed by the Center for Effective Global Action (CEGA).
References
Allaire, J., & Dervieux, C. (2024). quarto: R interface to “Quarto” markdown publishing system. https://github.com/quarto-dev/quarto-r
Allaire, J., Xie, Y., Dervieux, C., McPherson, J., Luraschi, J., Ushey, K., Atkins, A., Wickham, H., Cheng, J., Chang, W., & Iannone, R. (2024). rmarkdown: Dynamic documents for r. https://github.com/rstudio/rmarkdown
Francisco Rodriguez-Sanchez, & Connor P. Jackson. (2023). grateful: Facilitate citation of r packages. https://pakillo.github.io/grateful/
Hester, J., Henry, L., Müller, K., Ushey, K., Wickham, H., & Chang, W. (2024). withr: Run code “With” temporarily modified global state. https://withr.r-lib.org
Horst, A. M., Hill, A. P., & Gorman, K. B. (2020). palmerpenguins: Palmer archipelago (antarctica) penguin data. https://doi.org/10.5281/zenodo.3960218
Iannone, R., Vargas, M., & Choe, J. (2024). pointblank: Data validation and organization of metadata for local and remote tables. https://rstudio.github.io/pointblank/
Makowski, D., Lüdecke, D., Patil, I., Thériault, R., Ben-Shachar, M. S., & Wiernik, B. M. (2023). Automated results reporting as a practical tool to improve reproducibility and methodological best practices adoption. CRAN. https://easystats.github.io/report/
Ushey, K., & Wickham, H. (2024). renv: Project environments. https://rstudio.github.io/renv/
Wickham, H., Averick, M., Bryan, J., Chang, W., McGowan, L. D., François, R., Grolemund, G., Hayes, A., Henry, L., Hester, J., Kuhn, M., Pedersen, T. L., Miller, E., Bache, S. M., Müller, K., Ooms, J., Robinson, D., Seidel, D. P., Spinu, V., … Yutani, H. (2019). Welcome to the tidyverse. Journal of Open Source Software, 4(43), 1686. https://doi.org/10.21105/joss.01686
Wickham, H., Chang, W., Flight, R., Müller, K., & Hester, J. (2021). sessioninfo: R session information. https://github.com/r-lib/sessioninfo#readme
Xie, Y. (2014). knitr: A comprehensive tool for reproducible research in R. In V. Stodden, F. Leisch, & R. D. Peng (Eds.), Implementing reproducible computational research. Chapman; Hall/CRC.
Xie, Y. (2015). Dynamic documents with R and knitr (2nd ed.). Chapman; Hall/CRC. https://yihui.org/knitr/
Xie, Y. (2024). knitr: A general-purpose package for dynamic report generation in r. https://yihui.org/knitr/
Xie, Y., Allaire, J. J., & Grolemund, G. (2018). R markdown: The definitive guide. Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown
Xie, Y., Dervieux, C., & Riederer, E. (2020). R markdown cookbook. Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook