This readme file was generated on November 3, 2021 by Sarah Polk and Maike Kleemeyer
GENERAL INFORMATION
Title of Data set: ICED MPMs Description: Investigating reliability of estimates of multiparameter mapping
Author/Principal Investigator Information Name: Maike Kleemeyer ORCID: 0000-0002-9388-5535 Institution: n/a Email: n/a Date of data collection: n/a
Geographic location of data collection: n/a
Information about funding sources that supported the collection of the data: n/a
DATA & FILE OVERVIEW
File List: - Gitlab The linked gitlab repository contains all scripts for processing the imaging data including descriptions of their purpose as well as the required folder structure to rerun the scripts. - Data The data folder contains the extracted data from the 11 different regions of interest (gray matter, white matter, pars triangularis of the inferior frontal gyrus, pars opercularis of the inferior frontal gyrus, orbitofrontal cortex, anterior cingulate cortex, precuneus, poster middle temporal gyrus, caudate, putamen, and pallidum) for each parameter map (MTsat, PD, R1, R2*) for each day (one and two) and each session (1 and 2). Regions of interest were taken from the Harvard-Oxford atlas as included in FSL 5.0. - extract_from_ROIs This folder contains the script used to extract means and standard deviations from the predefined regions of interest. - Scripts The scripts folder contains the models and ought to be run on the derived data in the data folder given the following structure: /data /data/MPMsExtractedWide.csv /data/MPMsExtractedWideStd.csv /scripts /scripts/CalcICCsWithCIs.R /scripts/ICED_MPMs_analysis.R
Relationship between files, if important: n/a
Additional related data collected that was not included in the current data package: n/a
METHODOLOGICAL INFORMATION
Description of methods used for collection/generation of data:
Methods for processing the data:
Instrument- or software-specific information needed to interpret the data: <include full name and version of software, and any necessary packages or libraries needed to run scripts>
Standards and calibration information, if appropriate:
Environmental/experimental conditions:
Describe any quality-assurance procedures performed on the data:
People involved with sample collection, processing, analysis and/or submission: