Citing made simple: A practical guide for Zotero

Tejaswini Sharma

08/03/2026

Licence


Creative Commons Attribution 4.0

This work was originally created by Pat Callahan and Dejana Damjanovic under a CC-BY-SA 4.0 Creative Commons Attribution 4.0 International License and a CC0 1.0 Creative Commons Universal licence for code snippets. It was subsequently adapted and revised by Sarah von Grebmer zu Wolfsthurn. This current work by Tejaswini Sharma and Sarah von Grebmer zu Wolfsthurn is licensed under a CC-BY-SA 4.0 Creative Commons Attribution 4.0 International SA License. permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original. Code snippets are dedicated to the public domain and licenced under a CC0 1.0 Creative Commons Universal Licence. You may use, modify, distribute, and sell the code snippets for any purpose, without permission or attribution. The code snippets are provided “as is”, without warranty of any kind.

Contribution statement


Creator: Sharma, Tejaswini (orcid logo 0000-0002-6413-3895)

Reviewer: Von Grebmer zu Wolfsthurn, Sarah (orcid logo 0000-0002-6413-3895)

Prerequisites

Important

Before completing this submodule, please carefully read the following prerequisites.

Prerequisite Description Link/Where to find it
Zotero and Zotero Connector Citation tool and extension Download Link
R Version 4.5. or higher Download Link
RStudio Version 2026.01.1+403 or higher Download Link

Prerequisites (cont.)

Questions from the previous submodule?

Before we start: Survey time!

What is your level of familiarity with citing and referencing scientific papers?

  1. I have never heard of it before.

  2. I have heard of it but have never worked with it.

  3. I have basic understanding and experience with it.

  4. I am very familiar and have worked with it extensively.

How confident do you feel with the Zotero workflow of collection, organisation, and citing? (1 = Not confident at all, 5 = Very confident)

  1. 1

  2. 2

  3. 3

  4. 4

  5. 5

Discussion of survey results


What do we see in the results?

Where are we at?

Previously:

  • Familiarization with R basics
  • Advanced R skills
  • Version control with Git
  • Collaborative working with GitHub
  • Introduction to Quarto

Up next:

  • Citations and references: What are they and when/how to use them
  • Citation management tool: Using Zotero in our workflow

Learning goals

  • Explain the importance of citing scientific literature and citation tools
  • Familiarize yourself with different citation formats (CSL)
  • Set up and organize a personal Zotero library
  • Apply and develop a referencing workflow in Quarto and RStudio
  • Apply and develop a referencing workflow in MS Word

What are citations and references?

A small thought experiment..

Imagine reading various scientific papers to collect knowledge (= reviewing the literature). When you share this knowledge with someone, they would ask: “Where did you read this?”

Copyright: © FastArcher.

Thus, you need to cite the source of your knowledge; in this case, a scientific paper.

What are citations and references?

  • Citations are the in‑text pointers to sources you use (e.g., Sharma, 2025).
Example of a (fictional) citation.

What are citations and references?

  • Citations are the in‑text pointers to sources you use (e.g., Sharma, 2025).
Example of a (fictional) citation.
  • Whereas, references are the full bibliographic details listed at the end of a paper (Aksnes et al., 2019).
Example of a (fictional) reference (list).

Why are they needed?

From Aksnes et al. (2019):

  • Show what comes from others: References show which ideas and words are yours and which are taken from other people, so you do not steal their work and they get credit.

  • Back up what you say: References point to earlier studies that support your claims, so readers can see where your ideas fit and how trustworthy they are.

  • Let others double-check you: Clear citations help others follow your steps, spot mistakes or misquotes, and use your work to do new studies.

  • Connect ideas and track influence: Citations link papers into a big web of knowledge and are often used (not perfectly) to see which work has had a big impact.

How to cite and refer to a scientific paper?

  • Citation: In-text, you usually mention author and year.

    For example: “Recent results support this view (Miller & Rossi, 2021).”

  • Reference list: After, you provide the full bibliographic information:
    1. Author: all authors’ last names and initials.
    2. Date: When it was published (usually the year).
    3. Title: What the article is called.
    4. Source: Where it was published (journal name, volume, issue, page range, and DOI or URL if online).
      For example: Miller, A. B., & Rossi, L. M. (2021). Title of the article. Journal Name, 12(3), 45–60. https://doi.org/xx.xxx/yyyy.
      Note: Listed in an alphabetical order.

How to cite and refer to a scientific paper?

  • Citation: In-text, you usually mention author and year.

    For example: “Recent results support this view (Miller & Rossi, 2021).”

  • Reference list: After, you provide the full bibliographic information:
    1. Author: all authors’ last names and initials.
    2. Date: When it was published (usually the year).
    3. Title: What the article is called.
    4. Source: Where it was published (journal name, volume, issue, page range, and DOI or URL if online).
      For example: Miller, A. B., & Rossi, L. M. (2021). Title of the article. Journal Name, 12(3), 45–60. https://doi.org/xx.xxx/yyyy.
      Note: Listed in an alphabetical order.

Note

The exact formatting depends on the citation format.

Citation styles

Style Typical fields/usage In‑text example Reference list example (journal article)
APA Social sciences (e.g., psychology, education) (Smith & Lee, 2023) Smith, J., & Lee, K. (2023). Title of the article. Journal Name, 12(3), 123–145. https://doi.org/xx.xxx/yyyy
MLA Humanities (e.g., literature, languages) (Smith and Lee 123) Smith, John, and Karen Lee. “Title of the Article.” Journal Name, vol. 12, no. 3, 2023, pp. 123–145. ​
Chicago (Notes-Biblio) Humanities (e.g., history, arts (footnotes/endnotes) ¹ or (see note 1) Smith, John, and Karen Lee. “Title of the Article.” Journal Name 12, no. 3 (2023): 123–145. ​

Citation styles (cont.)

Style Typical fields/usage In‑text example Reference list example (journal article)
Chicago (Author‑Date) Natural and social sciences (Smith and Lee 2023, 123) Smith, John, and Karen Lee. 2023. “Title of the Article.” Journal Name 12 (3): 123–145.
IEEE STEM fields (e.g., engineering, computer science) …sample text… [13]” [13] J. Smith and K. Lee, “Title of the article,” Journal Name, vol. 12, no. 3, pp. 123–145, 2023.

Short exercise

Use a minute to think about which citation format is used in your field.

What are citation tools?

Citation tools (or reference managers) are apps or software that help you collect, organize, and format citations for academic essays or scientific research. Examples include:

What are citation tools?

What can they do?

  • Save bibliographic information from a browser or file
  • Create in-text citations
  • Add and update references automatically

Why are they useful?

  • They are consistent and efficient (broadly speaking)
  • Can produce different citation formats
  • Can store attachments, e.g., pdfs, notes, snapshots, urls

Questions at this point?

Brief overview of Zotero

How does Zotero work?

  • Collecting: One-click saving of metadata and attachments (pdfs, snapshots) from literature databases, and websites.
  • Organizing: Items can be grouped into collections, tagged, and searched.
  • Citing and referencing: Plugins for Word, Quarto, and Google Docs generate in‑text citations and bibliographies automatically.

How does Zotero work?

Zotero Interface.

Your turn!

In this next part, you will familiarize yourself with Zotero through hands-on exercices and activities:

Tip

Since this is a self-paced tutorial, take your time on navigating it; and it can be finished at home as well. We will have a check-in moment at the end of this session and discuss any remaining questions.

Wrapping up

  • For later: Finish the remaining of the ‘Introduction to Zotero’ tutorial and its exercises at home.

  • For now: Take one minute to assess your learning progress from the tutorial:

    • What is one key concept about citations or Zotero that became clearer after completing the exercises?

    • Which Zotero task can you now perform confidently, and which one still feels challenging?

    • How easy has it been navigating different CSL formats?

Looking into the future

  1. Take a minute to think about the following questions, first for yourself, then in a pair:
  • Can you identify some practical benefits of using Zotero?

  • What obstacles do you anticipate in using it consistently?

  • How can Zotero support you in your upcoming projects?

  1. Share your thoughts with the group.

Take-home messages

  • Citations and references are critical for tracing sources and giving credit to authors

  • Citation tools facilitate your workflow by collecting, organizing, and formatting citations, as well as providing storage for pdfs or notes

Make Zotero a habit!

Zotero can be your go-to tool for saving and citing studies, from assignments to thesis.

Learning goals: Check-In

Where are we at?

To conclude: Survey time!

What is your level of familiarity with citing and referencing scientific papers?

  1. I have never heard of it before.

  2. I have heard of it but have never worked with it.

  3. I have basic understanding and experience with it.

  4. I am very familiar and have worked with it extensively.

How confident do you feel with the Zotero workflow of collection, organisation, and citing? (1 = Not confident at all, 5 = Very confident)

  1. 1

  2. 2

  3. 3

  4. 4

  5. 5

Discussion of survey results


What do we see in the results?

References

Aksnes, D. W., Langfeldt, L., & Wouters, P. (2019). Citations, Citation Indicators, and Research Quality: An Overview of Basic Concepts and Theories. Sage Open, 9(1), 2158244019829575. https://doi.org/10.1177/2158244019829575

Thanks!

See you next session :)

Additional in-class activity

  • Activity: Get in a pair, navigate a literature database (Google Scholar), find a paper of your choice with its full text, analyse the citations and the reference list. Note what features you see and share in class.

CREDiT Contribution Statement - TO DO

Possible roles using the CRediT contribition system or the Zenodo Contribution System:

Name main content creator: Conceptualization, Software, Writing - Original Draft, Visualization. Sara Lil Middleton: Writing - Review & Editing, Supervision. Sarah von Grebmer zu Wolfsthurn: Conceptualisation, Writing - Review & Editing, Supervision, Project Administration, Validation.